Bootstrap Betweenness KS¶

current_flow_allostery.bootstrap_betweenness_ks.bootstrap_betweenness(databasePath, outputDatabase=None, querySQL='SELECT *; FROM Networks', systemGroupColumn='system', interactionGroupColumns=['Seqid_1', 'Seqid_2', 'Chain_Delta'], referenceSystems=['wt2'], valueColumn='Betweenness', alphas=[0.1], testAllPairs=False, outputBase='Edge_Betweenness_KS', outputToCSV=False, writeBootstrapDistributions=False, flushGroupCount=1, dryrun=False, verbose=True, verboseLevel=0)[source]¶

databasePath INPUT MUST BE GIVEN ouputDatabase databasePath querySQL ‘SELECT *; FROM Networks’ systemGroupColumn ‘system’ interactionGroupColumns [‘Seqid_1’,’Seqid_2’,’Chain_Delta’] referenceSystems [‘wt2’] valueColumn ‘Betweenness’ alphas [.1] testAllPairs False outputBase ‘Edge_Betweenness_KS’ outputToCSV False writeBootstrapDistributions False flushGroupCount 1 dryrun False verbose False verboseLevel 0

Example

current_flow_allostery.bootstrap_betweenness( ‘output_2/GB_Network.db’, ‘output_3/GB_Betweenness_Bootstrapped_KS.db’, querySQL=’SELECT * FROM Networks WHERE (Seqid_1={1})’, alphas=[0.05, 0.1, 0.15], writeBootstrapDistributions=True, flushGroupCount=25, verboseLevel=2 )